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    AAT2 aspartate aminotransferase [ Thalassiosira pseudonana CCMP1335 ]

    Gene ID: 7451457, updated on 21-Dec-2023

    Summary

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    Gene symbol
    AAT2
    Gene description
    aspartate aminotransferase
    Locus tag
    THAPSDRAFT_31424
    Gene type
    protein coding
    RNA name
    aspartate aminotransferase
    RefSeq status
    PROVISIONAL
    Organism
    Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
    Lineage
    Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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    Genomic context

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    See AAT2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_012064.1 (1358172..1359702)

    Chromosome 1 - NC_012064.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012064.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
    2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-aspartate:2-oxoglutarate aminotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in amino acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    aspartate aminotransferase
    XP_002286190.1
    • I got to this annotation as one of seven of the aspartate aminotransferases called by grail/genewise. There appears to be no signal peptide at the 5' end as checked by the online site SignalP. Gene symbol does NOT imply homology to the Arabidopsis AAT2 that is located in the cytosol. Sequence shows high similarity to other aspartate aminotransferases.

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_012064.1 Reference assembly

      Range
      1358172..1359702
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002286154.1 → XP_002286190.1  aspartate aminotransferase [Thalassiosira pseudonana CCMP1335]

      See identical proteins and their annotated locations for XP_002286190.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B8BQR8
      Conserved Domains (2) summary
      PLN02397
      Location:1 → 413
      PLN02397; aspartate transaminase
      pfam00155
      Location:39 → 405
      Aminotran_1_2; Aminotransferase class I and II
    Nucleotide Protein
    Heading Accession and Version

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