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    BMS1P4-AGAP5 BMS1P4-AGAP5 readthrough [ Homo sapiens (human) ]

    Gene ID: 113939925, updated on 17-Sep-2024

    Summary

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    Official Symbol
    BMS1P4-AGAP5provided by HGNC
    Official Full Name
    BMS1P4-AGAP5 readthroughprovided by HGNC
    Primary source
    HGNC:HGNC:55636
    See related
    Ensembl:ENSG00000242288 AllianceGenome:HGNC:55636
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    This locus represents naturally occurring readthrough transcription between the neighboring BMS1P4 (BMS1, ribosome biogenesis factor pseudogene 4) and AGAP5 (ArfGAP with GTPase domain, ankyrin repeat and PH domain 5) genes on chromosome 10. The readthrough transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is unlikely to produce a protein product. [provided by RefSeq, Jan 2019]
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    Genomic context

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    See BMS1P4-AGAP5 in Genome Data Viewer
    Location:
    10q22.2
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (73674275..73730506, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (74545692..74601920, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (75434033..75490264, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene myozenin 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3566 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:75407469-75408172 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3567 Neighboring gene synaptopodin 2 like Neighboring gene SYNPO2L antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 4994 Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 5 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:75468020-75468273 Neighboring gene BMS1 pseudogene 4 Neighboring gene RNA, 5S ribosomal pseudogene 320 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3568 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:75491691-75492411 Neighboring gene glutamate dehydrogenase 1 pseudogene 3 Neighboring gene dual specificity phosphatase 8 pseudogene 5 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:75500671-75501238 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:75501239-75501806 Neighboring gene uncharacterized LOC124902453 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:75503472-75504671

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    General gene information

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    Other Names

    • BMS1P4-AGAP5 readthough

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_160425.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022400, AC073389, BC020053
      Related
      ENST00000399449.3

    2. NR_160426.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022400, AC073389

    3. NR_160427.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022400, AC073389

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      73674275..73730506 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      74545692..74601920 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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    Other Literature Sources
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