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    LOC4330696 kinesin-like protein KIN-4C [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330696, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4330696
    Gene description
    kinesin-like protein KIN-4C
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    KIN4C; OsJ_08347; OJ1734_E02.4; OJ1734_E02.4/OJ1734_E02.5
    Expression
    Biased expression in flower buds (RPKM 8.1), flowers (RPKM 4.5) and 2 other tissues See more
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    Genomic context

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    See LOC4330696 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (31120608..31129546, complement)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene protease Do-like 9 Neighboring gene protein RICE SALT SENSITIVE 3-like Neighboring gene RING-H2 finger protein ATL46 Neighboring gene uncharacterized LOC4330699

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microtubule motor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule-based movement IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic spindle organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    kinesin-like protein KIN-4C
    Names
    LOC_Os02g50910
    Os02g0742800
    Os02g0742900
    P0585G03.27
    P0585G03.27/P0585G03.28
    chromosome-associated kinesin-like
    kinesin-like protein BC2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416883.1 → NP_001403812.1  kinesin-like protein KIN-4C

      Status: VALIDATED

      Source sequence(s)
      AK064545, AK106279, AP014958, CI217313, CI272477, CI308772
      UniProtKB/Swiss-Prot
      B9F2Y7, Q0DXN2, Q6Z2W0

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      31120608..31129546 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768060.2 → XP_015623546.1  kinesin-like protein KIN-4C

      Conserved Domains (3) summary
      COG1196
      Location:377 → 748
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:585 → 940
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cd01372
      Location:12 → 365
      KISc_KIF4; Kinesin motor domain, KIF4-like subfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B9F2Y7.1 GenPept UniProtKB/Swiss-Prot:B9F2Y7

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