U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC4333919 actin-1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333919, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4333919
    Gene description
    actin-1-like
    Locus tag
    OSNPB_030718100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    AC1; ACT1; Act2; RAC1; actin; OsRAc1; OsJ_011865
    Annotation information
    Annotation category: partial on reference assembly
    Expression
    Broad expression in flowers (RPKM 481.2), flower buds (RPKM 297.6) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4333919 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (29954640..29956504)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (29073990..29075867)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene UV-B-induced protein At3g17800, chloroplastic Neighboring gene anthranilate synthase beta subunit 2, chloroplastic-like Neighboring gene protein FAR1-RELATED SEQUENCE 5 Neighboring gene zinc-finger homeodomain protein 11

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Isolation and characterization of a rice mutant with narrow and rolled leaves. Wu C, et al. Planta, 2010 Jul. PMID 20443024
    2. Identification and molecular characterization of novel anther-specific genes in Oryza sativa L. by using cDNA microarray. Endo M, et al. Genes Genet Syst, 2004 Aug. PMID 15514441
    3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    actin-1
    Names
    Actin-1 protein
    LOC_Os03g50885
    OSJNBa0078A17.12

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402243.1 → NP_001389172.1  actin-1

      Status: VALIDATED

      Source sequence(s)
      AP014959, AU031931, AU312086, CB676596, D40094
      UniProtKB/Swiss-Prot
      A2XLF2, P13362, Q10DV7, Q84JJ5
      UniProtKB/TrEMBL
      A0A218KL39, V5K461

    2. NM_001418593.1 → NP_001405522.1  actin-1

      Status: VALIDATED

      Source sequence(s)
      AP014959, KX302608
      UniProtKB/Swiss-Prot
      A2XLF2, P13362, Q10DV7, Q84JJ5
      UniProtKB/TrEMBL
      A0A218KL39, V5K461

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      29954640..29956504
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10DV7.1 GenPept UniProtKB/Swiss-Prot:Q10DV7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.