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    LOC4338669 AP2-like ethylene-responsive transcription factor At2g41710 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338669, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4338669
    Gene description
    AP2-like ethylene-responsive transcription factor At2g41710
    Locus tag
    OSNPB_050389000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RLA1; SMOS1
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    Genomic context

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    See LOC4338669 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (18913524..18919146)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (18812070..18817749)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein uL1c Neighboring gene protein RETICULATA-RELATED 4, chloroplastic Neighboring gene uncharacterized LOC136356710 Neighboring gene sm-like protein LSM5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel AP2-type transcription factor, SMALL ORGAN SIZE1, controls organ size downstream of an auxin signaling pathway. Aya K, et al. Plant Cell Physiol, 2014 May. PMID 24486766
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data indicate that the small organ size1 (smos1) mutants are loss-of-function mutants for Os05g0389000.
      Title: A novel AP2-type transcription factor, SMALL ORGAN SIZE1, controls organ size downstream of an auxin signaling pathway.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aP2-like ethylene-responsive transcription factor SMOS1
    Names
    AP2 type transcription factor
    AP2-like ethylene-responsive transcription factor SMOS1
    LOC_Os05g32270
    OSJNBa0073E05.20
    Protein REDUCED LEAF ANGLE 1
    Protein SMALL ORGAN SIZE 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420478.1 → NP_001407407.1  aP2-like ethylene-responsive transcription factor SMOS1

      Status: VALIDATED

      Source sequence(s)
      AB897877, AK059324, AP014961, CB643165
      UniProtKB/Swiss-Prot
      Q0DIH8, Q60E56, X5HYT8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      18913524..18919146
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    X5HYT8.1 GenPept UniProtKB/Swiss-Prot:X5HYT8

    Gene LinkOut

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    Research Materials