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    RNF170 ring finger protein 170 [ Erinaceus europaeus (western European hedgehog) ]

    Gene ID: 103113222, updated on 11-Mar-2024

    Summary

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    Gene symbol
    RNF170
    Gene description
    ring finger protein 170
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Erinaceus europaeus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Erinaceidae; Erinaceinae; Erinaceus
    Orthologs
    human mouse all
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    Genomic context

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    See RNF170 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_10 current mEriEur2.1 (GCF_950295315.1) 2 NC_080163.1 (60819592..60856275)
    101 previous assembly EriEur2.0 (GCF_000296755.1) Unplaced Scaffold NW_006804109.1 (2233925..2269518)

    Chromosome 2 - NC_080163.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL38-like Neighboring gene hook microtubule tethering protein 3 Neighboring gene uncharacterized LOC132535548 Neighboring gene THAP domain containing 1 Neighboring gene cholinergic receptor nicotinic alpha 6 subunit

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase RNF170

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_950295315.1-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mEriEur2.1

    Genomic

    1. NC_080163.1 Reference mEriEur2.1

      Range
      60819592..60856275
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_060181695.1 → XP_060037678.1  E3 ubiquitin-protein ligase RNF170 isoform X2

    2. XM_007522744.3 → XP_007522806.1  E3 ubiquitin-protein ligase RNF170 isoform X1

      UniProtKB/TrEMBL
      A0A1S2ZQ30
      Conserved Domains (2) summary
      cd00162
      Location:87 → 133
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      pfam06803
      Location:203 → 239
      DUF1232; Protein of unknown function (DUF1232)
    Nucleotide Protein
    Heading Accession and Version

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