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    BFSP2-AS1 BFSP2 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 85003, updated on 22-Oct-2024

    Summary

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    Official Symbol
    BFSP2-AS1provided by HGNC
    Official Full Name
    BFSP2 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:28425
    See related
    Ensembl:ENSG00000249993 AllianceGenome:HGNC:28425
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See BFSP2-AS1 in Genome Data Viewer
    Location:
    3q22.1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (133426402..133491109, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (136171498..136236199, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (133145246..133209953, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene transmembrane protein 108 Neighboring gene TMEM108 antisense RNA 1 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:132996224-132997423 Neighboring gene uncharacterized LOC101927432 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20541 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20542 Neighboring gene beaded filament structural protein 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20543 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14745 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20544 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:133192065-133192724 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20545 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20546 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:133206223-133206723 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20547 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20548 Neighboring gene MAF1 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20549 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20550 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:133270481-133270980 Neighboring gene NANOG hESC enhancer GRCh37_chr3:133291701-133292202 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14746 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14747 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14748 Neighboring gene FAM76A pseudogene 1 Neighboring gene CDV3 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Clone Names

    • MGC2848

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135276.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022296

    2. NR_135277.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022296

    3. NR_135278.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022296

    4. NR_189055.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022296

    5. NR_189056.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022296

    6. NR_189057.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022296
      Related
      ENST00000833664.1

    7. NR_189058.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022296
      Related
      ENST00000833663.1

    8. NR_189059.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022296

    9. NR_189060.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022296

    10. NR_189061.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022296

    11. NR_189062.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022296

    12. NR_189063.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022296
      Related
      ENST00000833668.1

    13. NR_189064.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022296

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      133426402..133491109 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      136171498..136236199 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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