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    LINC02577 long intergenic non-protein coding RNA 2577 [ Homo sapiens (human) ]

    Gene ID: 111216280, updated on 12-Sep-2024

    Summary

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    Official Symbol
    LINC02577provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2577provided by HGNC
    Primary source
    HGNC:HGNC:53749
    See related
    Ensembl:ENSG00000228742 AllianceGenome:HGNC:53749
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CLAN; SLINKY
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See LINC02577 in Genome Data Viewer
    Location:
    7q22.3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (106775018..106838482)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (108091030..108154509)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (106415464..106478927)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375440 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26487 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18535 Neighboring gene MPRA-validated peak6673 silencer Neighboring gene coiled-coil domain containing 71 like Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:106358550-106359749 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26488 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26489 Neighboring gene MPRA-validated peak6674 silencer Neighboring gene MPRA-validated peak6675 silencer Neighboring gene Sharpr-MPRA regulatory region 6701 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:106415535-106416734 Neighboring gene RNA, 5S ribosomal pseudogene 236 Neighboring gene Sharpr-MPRA regulatory region 12136 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26490 Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma Neighboring gene CRISPRi-validated cis-regulatory element chr7.4040 Neighboring gene CRISPRi-validated cis-regulatory element chr7.4041 Neighboring gene CRISPRi-validated cis-regulatory element chr7.4042 Neighboring gene CRISPRi-validated cis-regulatory element chr7.4045 Neighboring gene CRISPRi-validated cis-regulatory element chr7.4046 Neighboring gene CRISPRi-validated cis-regulatory element chr7.4048 Neighboring gene CRISPRi-validated cis-regulatory element chr7.4050 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:106681203-106681414 Neighboring gene Sharpr-MPRA regulatory region 8060 Neighboring gene PRKAR2B antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 12069 Neighboring gene protein kinase cAMP-dependent type II regulatory subunit beta

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel lincRNA SLINKY is a prognostic biomarker in kidney cancer. Gong X, et al. Oncotarget, 2017 Mar 21. PMID 28423633, Free PMC Article
    2. Long noncoding RNA CLAN promotes lymphangiogenesis in the colorectal carcinoma. Guo Q, et al. Virchows Arch, 2022 Dec. PMID 36301367
    3. Epidermal long non-coding RNAs are regulated by ultraviolet irradiation. Kim KH, et al. Gene, 2017 Dec 30. PMID 28942040
    4. Human chromosome 7: DNA sequence and biology. Scherer SW, et al. Science, 2003 May 2. PMID 12690205, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See Variation Viewer (GRCh37.p13)

    General gene information

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    Other Names

    • Survival-predictive LincRNA in Kidney cancer
    • colorectal cancer lymphangiogenesis associated lncRNA

    Clone Names

    • AC002384.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_170301.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC002384, AC025728

    2. NR_170302.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC002384, AC025728

    3. NR_170303.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC002384, AC025728

    4. NR_170304.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC002384, AC025728

    5. NR_170305.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC002384, AC025728

    6. NR_170306.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC002384, AC025728
      Related
      ENST00000655590.1

    7. NR_170307.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC002384, AC025728

    8. NR_170308.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC002384, AC025728
      Related
      ENST00000650196.1

    9. NR_170309.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC002384, AC025728
      Related
      ENST00000602761.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      106775018..106838482
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      108091030..108154509
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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