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    AP3S1 adaptor related protein complex 3 subunit sigma 1 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 471606, updated on 17-Aug-2024

    Summary

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    Official Symbol
    AP3S1provided by VGNC
    Official Full Name
    adaptor related protein complex 3 subunit sigma 1provided by VGNC
    Primary source
    VGNC:VGNC:6379
    Locus tag
    CK820_G0028220
    See related
    Ensembl:ENSPTRG00000017155
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 4 NC_072402.2 (113550756..113623197)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 5 NC_072403.1 (113624033..113696304)

    Chromosome 4 - NC_072402.2Genomic Context describing neighboring genes Neighboring gene cysteine dioxygenase type 1 Neighboring gene autophagy related 12 Neighboring gene probable ATP-dependent RNA helicase DDX43 Neighboring gene laeverin Neighboring gene small ribosomal subunit protein eS25-like Neighboring gene ADP ribosylation factor like GTPase 14 effector protein like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in Golgi to vacuole transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of AP-3 adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-3 complex subunit sigma-1
    Names
    adaptor related protein complex 3 sigma 1 subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072402.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      113550756..113623197
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001148407.8 → XP_001148407.1  AP-3 complex subunit sigma-1 isoform X3

      See identical proteins and their annotated locations for XP_001148407.1

      Conserved Domains (1) summary
      COG5030
      Location:101 → 255
      APS2; Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

    2. XM_054684532.1 → XP_054540507.1  AP-3 complex subunit sigma-1 isoform X1

    3. XM_016953651.4 → XP_016809140.1  AP-3 complex subunit sigma-1 isoform X4

      Conserved Domains (1) summary
      COG5030
      Location:101 → 251
      APS2; Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

    4. XM_063810589.1 → XP_063666659.1  AP-3 complex subunit sigma-1 isoform X5

    5. XM_016953652.3 → XP_016809141.1  AP-3 complex subunit sigma-1 isoform X6

      Conserved Domains (1) summary
      cl38905
      Location:101 → 178
      longin-like; Longin-like domains

    6. XM_054684534.2 → XP_054540509.1  AP-3 complex subunit sigma-1 isoform X8

    7. XM_054684533.1 → XP_054540508.1  AP-3 complex subunit sigma-1 isoform X2

    8. XM_016953653.4 → XP_016809142.1  AP-3 complex subunit sigma-1 isoform X7

      Related
      ENSPTRP00000029350.2
      Conserved Domains (1) summary
      COG5030
      Location:1 → 130
      APS2; Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

    RNA

    1. XR_010156978.1 RNA Sequence

    2. XR_008548070.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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