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    LOC4348449 probable galacturonosyltransferase 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348449, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4348449
    Gene description
    probable galacturonosyltransferase 3
    Locus tag
    OSNPB_100363100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 17.0), flower buds (RPKM 13.2) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (11844701..11849359)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (11250881..11255584)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene probable histidine kinase 5 Neighboring gene uncharacterized LOC136353525 Neighboring gene acetyl-CoA carboxylase 1-like Neighboring gene pentatricopeptide repeat-containing protein At4g26680, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable galacturonosyltransferase 3
    Names
    Os10g0363100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      11844701..11849359
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026020909.2 → XP_025876694.1  probable galacturonosyltransferase 3 isoform X6

      UniProtKB/TrEMBL
      A2Z6E3
      Conserved Domains (1) summary
      cl28622
      Location:21 → 622
      PLN02870; Probable galacturonosyltransferase

    2. XM_015759470.3 → XP_015614956.1  probable galacturonosyltransferase 3 isoform X3

      UniProtKB/TrEMBL
      A3C403, Q339E2
      Conserved Domains (1) summary
      PLN02910
      Location:46 → 685
      PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase

    3. XM_066304599.1 → XP_066160696.1  probable galacturonosyltransferase 3 isoform X4

      UniProtKB/TrEMBL
      A3C403

    4. XM_026020908.2 → XP_025876693.1  probable galacturonosyltransferase 3 isoform X5

      UniProtKB/TrEMBL
      A2Z6E3
      Conserved Domains (1) summary
      cl28622
      Location:64 → 665
      PLN02870; Probable galacturonosyltransferase

    5. XM_015759468.3 → XP_015614954.1  probable galacturonosyltransferase 3 isoform X1

      UniProtKB/TrEMBL
      A2Z6E3
      Conserved Domains (1) summary
      PLN02910
      Location:94 → 712
      PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase

    6. XM_066304598.1 → XP_066160695.1  probable galacturonosyltransferase 3 isoform X2

      UniProtKB/TrEMBL
      A2Z6E3

    7. XM_015759472.3 → XP_015614958.1  probable galacturonosyltransferase 3 isoform X3

      UniProtKB/TrEMBL
      A3C403, Q339E2
      Conserved Domains (1) summary
      PLN02910
      Location:46 → 685
      PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase

    8. XM_066304600.1 → XP_066160697.1  probable galacturonosyltransferase 3 isoform X4

      UniProtKB/TrEMBL
      A3C403

    9. XM_015759467.3 → XP_015614953.1  probable galacturonosyltransferase 3 isoform X1

      UniProtKB/TrEMBL
      A2Z6E3
      Conserved Domains (1) summary
      PLN02910
      Location:94 → 712
      PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase
    Nucleotide Protein
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