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    LOC4352320 toMV resistant protein Tm-2 netted virescent [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352320, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4352320
    Gene description
    toMV resistant protein Tm-2 netted virescent
    Locus tag
    OSNPB_120510500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4352320 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (20151735..20156387)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (19662857..19667755)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9266999 Neighboring gene uncharacterized LOC9271902 Neighboring gene probable disease resistance protein RF9 Neighboring gene uncharacterized LOC136351107 Neighboring gene uncharacterized LOC9269766 Neighboring gene LIM domain-containing protein WLIM1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    toMV resistant protein Tm-2 netted virescent

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      20151735..20156387
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763157.3 → XP_015618643.1  toMV resistant protein Tm-2 netted virescent

      UniProtKB/TrEMBL
      Q0IN33, Q2QQ13
      Conserved Domains (1) summary
      pfam00931
      Location:2 → 263
      NB-ARC; NB-ARC domain

    2. XM_066306688.1 → XP_066162785.1  toMV resistant protein Tm-2 netted virescent

      UniProtKB/TrEMBL
      Q2QQ13
    Nucleotide Protein
    Heading Accession and Version

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