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    LOC4329830 uncharacterized LOC4329830 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329830, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4329830
    Gene description
    uncharacterized LOC4329830
    Locus tag
    OSNPB_020591600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 8.8), leaves before flowering (RPKM 7.9) and 6 other tissues See more
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    Genomic context

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    See LOC4329830 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (23354583..23362771, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (22872122..22880289, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9268149 Neighboring gene protein POLYCHOME Neighboring gene large ribosomal subunit protein eL6x Neighboring gene ribosome biogenesis protein BRX1 homolog 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4329830
    Names
    OSJNBa0006O15.43-1
    OSJNBa0016G10.3-1
    Os02g0591600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      23354583..23362771 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767711.3 → XP_015623197.1  uncharacterized protein LOC4329830

      UniProtKB/TrEMBL
      B7ESJ6, B9F0T7, Q6YY65
      Conserved Domains (3) summary
      COG2319
      Location:148 → 475
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:94 → 136
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:87 → 292
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_015767710.3 → XP_015623196.1  uncharacterized protein LOC4329830

      UniProtKB/TrEMBL
      B7ESJ6, B9F0T7, Q6YY65
      Conserved Domains (3) summary
      COG2319
      Location:148 → 475
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:94 → 136
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:87 → 292
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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