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    LOC4328880 uncharacterized LOC4328880 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328880, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328880
    Gene description
    uncharacterized LOC4328880
    Locus tag
    OSNPB_020249500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Restricted expression toward milk grains (RPKM 38.1) See more
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    Genomic context

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    See LOC4328880 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (8458782..8462288)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (8433035..8436822)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase EL5-like Neighboring gene RING-H2 finger protein ATL39 Neighboring gene glutelin type-B 1-like Neighboring gene glutelin type-B 2-like Neighboring gene uncharacterized LOC4328882

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    uncharacterized protein LOC4328880
    Names
    Os02g0249500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      8458782..8462288
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066308096.1 → XP_066164193.1  uncharacterized protein LOC4328880 isoform X1

    2. XM_015768659.3 → XP_015624145.1  uncharacterized protein LOC4328880 isoform X1

      UniProtKB/TrEMBL
      B7F0G0, B9F4T0, Q0E2D6
      Conserved Domains (1) summary
      cl29093
      Location:174 → 263
      SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...

    3. XM_066308095.1 → XP_066164192.1  uncharacterized protein LOC4328880 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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