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    LOC4333857 uncharacterized LOC4333857 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333857, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4333857
    Gene description
    uncharacterized LOC4333857
    Locus tag
    OSNPB_030706900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 52.6), roots before flowering (RPKM 47.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (29322685..29330432, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (28448813..28456579, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein FAF-like, chloroplastic Neighboring gene transcription factor TB1-like Neighboring gene uncharacterized LOC136355884 Neighboring gene uncharacterized LOC4333858 Neighboring gene uncharacterized LOC4333859

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Decreased grain size1, a C3HC4-type RING protein, influences grain size in rice (Oryza sativa L.). Zhu X, et al. Plant Mol Biol, 2021 Mar. PMID 33387175
    2. Expression of a RING-HC protein from rice improves resistance to Pseudomonas syringae pv. tomato DC3000 in transgenic Arabidopsis thaliana. Cheung MY, et al. J Exp Bot, 2007. PMID 18182423
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Decreased grain size1, a C3HC4-type RING protein, influences grain size in rice (Oryza sativa L.).
      Title: Decreased grain size1, a C3HC4-type RING protein, influences grain size in rice (Oryza sativa L.).
    2. Ecotopic expression in transgenic Arabidopsis thaliana enhanced the defence response toward Pseudomonas syringae pv. tomato DC3000
      Title: Expression of a RING-HC protein from rice improves resistance to Pseudomonas syringae pv. tomato DC3000 in transgenic Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4333857
    Names
    Os03g0706900
    RING-HC protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      29322685..29330432 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776766.3 → XP_015632252.1  uncharacterized protein LOC4333857

      UniProtKB/TrEMBL
      A0A5S6RAL7, B8AQB3, Q0DP95, Q10E70, Q94GS8
      Conserved Domains (3) summary
      COG5236
      Location:380 → 468
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam10269
      Location:34 → 298
      Tmemb_185A; Transmembrane Fragile-X-F protein
      pfam13920
      Location:422 → 465
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
    Nucleotide Protein
    Heading Accession and Version

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