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    LOC4335949 protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335949, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4335949
    Gene description
    protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE-like
    Locus tag
    OSNPB_040444300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ARGOS; OsARGOS
    Expression
    Biased expression in roots before flowering (RPKM 6.0), milk grains (RPKM 0.4) and 1 other tissue See more
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    Genomic context

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    See LOC4335949 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (22646380..22648315)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22157285..22159231)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9268617 Neighboring gene calmodulin-binding protein 60 D Neighboring gene MLO-like protein 1 Neighboring gene 26S proteasome non-ATPase regulatory subunit 11 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in positive regulation of organ growth IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE
    Names
    LOC_Os04g36670
    OSJNBa0027P08.2
    OSJNBa0058G03.5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419354.1 → NP_001406283.1  protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE

      Status: VALIDATED

      Source sequence(s)
      AK102641
      UniProtKB/Swiss-Prot
      A0A0N7KJ43, A5X5P3, Q7X6L2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      22646380..22648315
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778613.3 → XP_015634099.1  protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE isoform X1

      UniProtKB/Swiss-Prot
      A0A0N7KJ43, A5X5P3, Q7X6L2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7X6L2.1 GenPept UniProtKB/Swiss-Prot:Q7X6L2

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