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    LOC9266404 disease resistance protein PIK6-NP-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9266404, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC9266404
    Gene description
    disease resistance protein PIK6-NP-like
    Locus tag
    OSNPB_060287500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Pid4-SN; Pid4-NPB
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    Genomic context

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    See LOC9266404 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (10612882..10619404)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (10435771..10442483)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein RPM1-like Neighboring gene disease resistance protein PIK6-NP-like Neighboring gene putative disease resistance RPP13-like protein 3 Neighboring gene uncharacterized LOC112939326

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein PIK6-NP-like; putative disease resistance RPP13-like protein 3
    Names
    NBS-LRR disease resistance protein-like
    Os06g0287500
    P0649C11.22-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      10612882..10619404
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311274.1 → XP_066167371.1  disease resistance protein PIK6-NP-like isoform X1

      UniProtKB/TrEMBL
      B7EIJ4

    2. XM_066311277.1 → XP_066167374.1  putative disease resistance RPP13-like protein 3 isoform X2

      UniProtKB/TrEMBL
      Q5VN64

    3. XM_066311276.1 → XP_066167373.1  putative disease resistance RPP13-like protein 3 isoform X2

      UniProtKB/TrEMBL
      Q5VN64

    4. XM_066311278.1 → XP_066167375.1  putative disease resistance RPP13-like protein 3 isoform X2

      UniProtKB/TrEMBL
      Q5VN64

    5. XM_066311275.1 → XP_066167372.1  disease resistance protein PIK6-NP-like isoform X1

      UniProtKB/TrEMBL
      B7EIJ4

    6. XM_066311279.1 → XP_066167376.1  putative disease resistance RPP13-like protein 3 isoform X2

      UniProtKB/TrEMBL
      Q5VN64

    7. XM_066311280.1 → XP_066167377.1  putative disease resistance RPP13-like protein 3 isoform X3

    Nucleotide Protein
    Heading Accession and Version

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