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    LOC4343218 peptidyl-prolyl cis-trans isomerase CYP21-4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343218, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4343218
    Gene description
    peptidyl-prolyl cis-trans isomerase CYP21-4
    Locus tag
    OSNPB_070476500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4343218 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (17420475..17426126, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (17254933..17260670, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein CTR9 homolog Neighboring gene uncharacterized LOC136357312 Neighboring gene thioredoxin-like protein CDSP32, chloroplastic Neighboring gene DNA-directed RNA polymerase III subunit RPC8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein peptidyl-prolyl isomerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptidyl-prolyl cis-trans isomerase CYP21-4
    Names
    Os07g0476500
    P0640E12.105
    peptidyl-prolyl cis-trans isomerase -related-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      17420475..17426126 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792489.3 → XP_015647975.1  peptidyl-prolyl cis-trans isomerase CYP21-4

      UniProtKB/TrEMBL
      A0A0P0X5K3, B8B5Z8, B9FX67, Q7EYT3
      Conserved Domains (1) summary
      cd00317
      Location:82 → 226
      cyclophilin; cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug ...

    2. XM_015792488.2 → XP_015647974.1  peptidyl-prolyl cis-trans isomerase CYP21-4

      UniProtKB/TrEMBL
      A0A0P0X5K3, B8B5Z8, B9FX67, Q7EYT3
      Conserved Domains (1) summary
      cd00317
      Location:82 → 226
      cyclophilin; cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug ...
    Nucleotide Protein
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