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    LOC4345459 mitochondrial carrier protein MTM1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345459, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4345459
    Gene description
    mitochondrial carrier protein MTM1
    Locus tag
    OSNPB_080386800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in mature seeds (RPKM 72.5), roots before flowering (RPKM 24.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (18387632..18393162)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (18252002..18257511)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene cytochrome B5-like protein Neighboring gene hydroxyproline O-galactosyltransferase HPGT1 Neighboring gene golgin candidate 4 Neighboring gene uncharacterized LOC136357539

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mitochondrial transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mitochondrial carrier protein MTM1
    Names
    Os08g0386800
    P0434E03.16-1
    P0434E03.16-2
    putative mitochondrial carrier protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      18387632..18393162
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795350.3 → XP_015650836.1  mitochondrial carrier protein MTM1

      UniProtKB/TrEMBL
      A0A0N7KPS8, B8BAC1, Q6ZA15
      Conserved Domains (1) summary
      pfam00153
      Location:321 → 405
      Mito_carr; Mitochondrial carrier protein
    Nucleotide Protein
    Heading Accession and Version

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