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    LOC4331340 uncharacterized LOC4331340 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331340, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331340
    Gene description
    uncharacterized LOC4331340
    Locus tag
    OSNPB_030108700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 11.2), flower buds (RPKM 8.4) and 6 other tissues See more
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    Genomic context

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    See LOC4331340 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (516328..517680, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (508949..510599, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting-associated protein 24 homolog 1 Neighboring gene very-long-chain aldehyde decarbonylase GL1-10-like Neighboring gene DEAD-box ATP-dependent RNA helicase 50-like Neighboring gene cyclin-dependent kinase A-1-like Neighboring gene NAC transcription factor 32

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4331340
    Names
    Os03g0108700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      516328..517680 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776189.3 → XP_015631675.1  uncharacterized protein LOC4331340

      UniProtKB/TrEMBL
      A0A0P0VS19, Q0DVX1
    Nucleotide Protein
    Heading Accession and Version

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