U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC4329000 cytochrome c-type biogenesis CcmH-like mitochondrial protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329000, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4329000
    Gene description
    cytochrome c-type biogenesis CcmH-like mitochondrial protein
    Locus tag
    OSNPB_020275100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CCMH; OsCCMH; OsJ_06229
    Expression
    Ubiquitous expression in flowers (RPKM 5.7), flower buds (RPKM 5.6) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4329000 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (10112262..10116778)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (10083408..10087895)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4328998 Neighboring gene probable plastidic glucose transporter 2 Neighboring gene galactoside 2-alpha-L-fucosyltransferase Neighboring gene uncharacterized LOC136355110

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    cytochrome c-type biogenesis CcmH-like mitochondrial protein
    Names
    LOC_Os02g17520
    P0017G06.11
    P0413A11.41
    cytochrome c biogenesis protein-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416505.1 → NP_001403434.1  cytochrome c-type biogenesis CcmH-like mitochondrial protein

      Status: VALIDATED

      Source sequence(s)
      CB673118, CI641811, CI713091
      UniProtKB/Swiss-Prot
      A0A0P0VHM5, Q6K7S7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      10112262..10116778
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026023372.2 → XP_025879157.1  cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0VHM5, B8AFK5, Q6K7S7
      Conserved Domains (1) summary
      pfam03918
      Location:14 → 132
      CcmH; Cytochrome C biogenesis protein

    2. XM_026023371.2 → XP_025879156.1  cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0VHM5, B8AFK5, Q6K7S7
      Conserved Domains (1) summary
      pfam03918
      Location:14 → 132
      CcmH; Cytochrome C biogenesis protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6K7S7.1 GenPept UniProtKB/Swiss-Prot:Q6K7S7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials