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    LOC4340430 anthocyanin regulatory C1 protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340430, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340430
    Gene description
    anthocyanin regulatory C1 protein
    Locus tag
    OSNPB_060205100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    C1
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC4340430 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (5481818..5483504)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (5314906..5316851)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357076 Neighboring gene ubiquitin-like protein ATG12 Neighboring gene uncharacterized LOC107281225 Neighboring gene uncharacterized LOC112939314

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Genetic and molecular analysis of a purple sheath somaclonal mutant in japonica rice. Gao D, et al. Plant Cell Rep, 2011 May. PMID 21249365
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    anthocyanin regulatory C1 protein
    Names
    Myb protein
    OSJNBb0015B15.17
    Os06g0205100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      5481818..5483504
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787145.3 → XP_015642631.1  anthocyanin regulatory C1 protein

      UniProtKB/TrEMBL
      E9MZX3, Q69NN9, Q76B79, Q9ZR50
      Conserved Domains (2) summary
      smart00717
      Location:14 → 63
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      pfam00249
      Location:14 → 61
      Myb_DNA-binding; Myb-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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