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    LOC4343285 uncharacterized LOC4343285 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343285, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343285
    Gene description
    uncharacterized LOC4343285
    Locus tag
    OSNPB_070494900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1058_B11.118
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 21.2), roots after flowering (RPKM 21.2) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (18728561..18732574, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (18503157..18507238, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107275465 Neighboring gene wall-associated receptor kinase 2 Neighboring gene wall-associated receptor kinase-like 1 Neighboring gene probable (S)-ureidoglycine aminohydrolase Neighboring gene putative casein kinase II subunit beta-4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4343285
    Names
    Os07g0494900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      18728561..18732574 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791889.3 → XP_015647375.1  uncharacterized protein LOC4343285 isoform X1

      UniProtKB/TrEMBL
      B9FXB8
      Conserved Domains (2) summary
      pfam15982
      Location:343 → 464
      TMEM135_C_rich; N-terminal cysteine-rich region of Transmembrane protein 135
      pfam02466
      Location:159 → 209
      Tim17; Tim17/Tim22/Tim23/Pmp24 family

    2. XM_066312319.1 → XP_066168416.1  uncharacterized protein LOC4343285 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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