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    LOC4343760 formin-like protein 13 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343760, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4343760
    Gene description
    formin-like protein 13
    Locus tag
    OSNPB_070588200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    FH13; OsFH13; OJ1047_C01.20
    Expression
    Ubiquitous expression in roots before flowering (RPKM 6.9), leaves before flowering (RPKM 6.8) and 6 other tissues See more
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    Genomic context

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    See LOC4343760 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (24168986..24174909)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (23944547..23950442)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4343759 Neighboring gene pentatricopeptide repeat-containing protein At1g25360 Neighboring gene uncharacterized LOC4343761 Neighboring gene transcription factor RSL3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in actin nucleation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    formin-like protein 13
    Names
    LOC_Os07g39920
    OSJNBb0005G07.114
    putative formin homology(FH) domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422249.1 → NP_001409178.1  formin-like protein 13 precursor

      Status: VALIDATED

      Source sequence(s)
      AK120511, CI231293, CI277109, CI278546, CI536967
      UniProtKB/Swiss-Prot
      A0A0P0X886, Q0D519, Q6ZIP3
      UniProtKB/TrEMBL
      B8B804

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      24168986..24174909
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0D519.1 GenPept UniProtKB/Swiss-Prot:Q0D519

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