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    LOC4327189 glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327189, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327189
    Gene description
    glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR
    Locus tag
    OSNPB_010228600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 11.9), flowers (RPKM 11.8) and 6 other tissues See more
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    Genomic context

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    See LOC4327189 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (7110917..7113995, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (7100980..7103261, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g25630 Neighboring gene uncharacterized LOC4327188 Neighboring gene uncharacterized LOC112937640 Neighboring gene uncharacterized LOC4327191 Neighboring gene transcription factor MYB3R-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glyoxylate reductase (NADPH) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hydroxypyruvate reductase [NAD(P)H] activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR
    Names
    Os01g0228600
    P0452F10.23-1
    P0452F10.23-2
    hydroxyphenylpyruvate reductase
    putative D-isomer specific 2-hydroxyacid dehydrogenase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      7110917..7113995 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761239.2 → XP_015616725.1  glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR

      UniProtKB/TrEMBL
      A0A0N7KCL4, A0A979HJE9, Q5N7Y9
      Conserved Domains (2) summary
      COG1052
      Location:6 → 315
      LdhA; Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase [Energy production and conversion, Coenzyme transport and metabolism, General function prediction only]
      cd12156
      Location:6 → 305
      HPPR; Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials