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    LOC4349493 uncharacterized LOC4349493 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349493, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4349493
    Gene description
    uncharacterized LOC4349493
    Locus tag
    OSNPB_100576600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 36.7), milk grains (RPKM 24.9) and 6 other tissues See more
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    Genomic context

    See LOC4349493 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (23656295..23657781, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (22964100..22965617, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107279122 Neighboring gene serine/threonine-protein phosphatase 7 long form homolog Neighboring gene uncharacterized LOC136353661 Neighboring gene cinnamoyl-CoA reductase-like SNL6 Neighboring gene uncharacterized LOC4349495

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    uncharacterized protein LOC4349493
    Names
    Os10g0576600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      23656295..23657781 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757227.3XP_015612713.1  uncharacterized protein LOC4349493

      UniProtKB/TrEMBL
      A0A5S6R6X4, A2ZAJ4, Q0IVE2, Q7XBV4, Q8W3H1
      Conserved Domains (2) summary
      TIGR02917
      Location:112192
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:122153
      TPR; TPR repeat [structural motif]