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    LOC4339095 alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339095, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4339095
    Gene description
    alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial
    Locus tag
    OSNPB_050475400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 41.0), roots before flowering (RPKM 35.8) and 4 other tissues See more
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    Genomic context

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    See LOC4339095 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (23470436..23474324, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (23356152..23360048, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene extensin-like Neighboring gene TOM1-like protein 6 Neighboring gene uncharacterized LOC136356750 Neighboring gene uncharacterized LOC112938981 Neighboring gene protein FAR1-RELATED SEQUENCE 5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Leaf senescence in rice plants: cloning and characterization of senescence up-regulated genes. Lee RH, et al. J Exp Bot, 2001 May. PMID 11432928
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alanine-glyoxylate transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-alanine catabolic process, by transamination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glyoxylate catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial
    Names
    Os05g0475400
    alanine:glyoxylate aminotransferase-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      23470436..23474324 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784007.3 → XP_015639493.1  alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial

      UniProtKB/TrEMBL
      B8AZ97, B9FKR5
      Conserved Domains (1) summary
      COG0160
      Location:45 → 477
      GabT; 4-aminobutyrate aminotransferase or related aminotransferase [Amino acid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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