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    LOC4332627 GDSL esterase/lipase At4g16230 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332627, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4332627
    Gene description
    GDSL esterase/lipase At4g16230
    Locus tag
    OSNPB_030310000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 11.6), leaves before flowering (RPKM 11.3) and 6 other tissues See more
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    Genomic context

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    See LOC4332627 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (11113271..11115597)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (11059611..11071053)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At3g06430, chloroplastic Neighboring gene F-box protein SKIP2-like Neighboring gene probable enoyl-CoA hydratase 1, peroxisomal Neighboring gene uncharacterized LOC4332629

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, acting on ester bonds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GDSL esterase/lipase At4g16230
    Names
    Os03g0310000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      11113271..11115597
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776835.3 → XP_015632321.1  GDSL esterase/lipase At4g16230

      UniProtKB/TrEMBL
      A0A8J8YFG9, A2XFW9, A3AH95, Q0DSG0, Q10MG0
      Conserved Domains (1) summary
      cd01837
      Location:31 → 351
      SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...
    Nucleotide Protein
    Heading Accession and Version

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