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    LOC4336950 probable potassium transporter 15 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336950, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4336950
    Gene description
    probable potassium transporter 15
    Locus tag
    OSNPB_040610700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    HAK15; OsHAK15
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    Genomic context

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    See LOC4336950 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (31459814..31465123, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (30952466..30957607, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene methionine aminopeptidase 1B, chloroplastic Neighboring gene uncharacterized protein ECU03_1610 Neighboring gene oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic-like Neighboring gene serine/threonine-protein kinase CTR1 Neighboring gene putative 26S proteasome non-ATPase regulatory subunit 8 homolog B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables potassium ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in potassium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plant-type vacuole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in vacuolar membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable potassium transporter 15
    Names
    LOC_Os04g52120
    OSJNBa0085I10.13
    putative potasium transporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419851.1 → NP_001406780.1  probable potassium transporter 15

      Status: VALIDATED

      Source sequence(s)
      AK060729, AK100672, CB667740, CI285394, CI534226, CI566991, CI572839, CI628160
      UniProtKB/Swiss-Prot
      A0A0P0WEU0, Q0JA91, Q7XPL3, Q8VXA8
      UniProtKB/TrEMBL
      Q01JS6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      31459814..31465123 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309184.1 → XP_066165281.1  probable potassium transporter 15 isoform X2

    2. XM_015780901.3 → XP_015636387.1  probable potassium transporter 15 isoform X1

      UniProtKB/TrEMBL
      B8ATX7, B9FCF4
      Conserved Domains (1) summary
      cl15781
      Location:1 → 743
      K_trans; K+ potassium transporter

    3. XM_026024793.2 → XP_025880578.1  probable potassium transporter 15 isoform X3

      Conserved Domains (1) summary
      cl15781
      Location:1 → 646
      K_trans; K+ potassium transporter
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XPL3.2 GenPept UniProtKB/Swiss-Prot:Q7XPL3

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