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    LOC4349148 RHOMBOID-like protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349148, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4349148
    Gene description
    RHOMBOID-like protein 2
    Locus tag
    OSNPB_100521900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 264.2), leaves before flowering (RPKM 18.8) and 1 other tissue See more
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    Genomic context

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    See LOC4349148 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (20898624..20900824)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (20207332..20209555)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4349145 Neighboring gene probable E3 ubiquitin-protein ligase XBOS33 Neighboring gene shaggy-related protein kinase alpha Neighboring gene probable methyltransferase PMT15 Neighboring gene formin-like protein 14

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RHOMBOID-like protein 2
    Names
    Os10g0521900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      20898624..20900824
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759164.3 → XP_015614650.1  RHOMBOID-like protein 2

      UniProtKB/TrEMBL
      A0A0N7KS35, A2Z9G1, Q8LNI7
      Conserved Domains (1) summary
      pfam01694
      Location:114 → 255
      Rhomboid; Rhomboid family
    Nucleotide Protein
    Heading Accession and Version

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