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    LOC4325183 UDP-xylose transporter 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325183, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325183
    Gene description
    UDP-xylose transporter 3
    Locus tag
    OSNPB_010167500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0028E10.8; OJ1276_B06.6
    Expression
    Ubiquitous expression in roots before flowering (RPKM 72.5), flower buds (RPKM 67.7) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (3455715..3458961, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (3446936..3450217, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene receptor like protein 22 Neighboring gene protein synthesis inhibitor II Neighboring gene uncharacterized LOC107276245 Neighboring gene uncharacterized LOC9272035 Neighboring gene pentatricopeptide repeat-containing protein At5g66631

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables UDP-xylose transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UDP-xylose transporter 3
    Names
    Os01g0167500
    P0701D05.34
    putative glucose-6-phosphate/phosphate- tranlocator

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      3455715..3458961 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764178.2 → XP_015619664.1  UDP-xylose transporter 3

      UniProtKB/TrEMBL
      B8ADF9, Q0JQE3, Q7F4F1, Q9AS84, Q9AV91
      Conserved Domains (1) summary
      cl26744
      Location:30 → 295
      TPT; Triose-phosphate Transporter family
    Nucleotide Protein
    Heading Accession and Version

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