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    LOC4327129 protein kinase PINOID 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327129, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4327129
    Gene description
    protein kinase PINOID 2-like
    Locus tag
    OSNPB_010174700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PID2; OsPIDlike
    Expression
    Ubiquitous expression in flower buds (RPKM 3.0), flowers (RPKM 2.4) and 6 other tissues See more
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    Genomic context

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    See LOC4327129 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (3844888..3852395, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (3835127..3842617, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9266294 Neighboring gene probable prolyl 4-hydroxylase 6 Neighboring gene zinc finger CCCH domain-containing protein 1-like Neighboring gene monothiol glutaredoxin-S1, mitochondrial-like Neighboring gene uncharacterized LOC4327131

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein kinase PINOID 2
    Names
    LOC_Os01g07940
    OSJNBa0089K24.26
    OSJNBa0089K24.26-1
    OSJNBa0089K24.26-2
    Protein PID-like
    putative protein kinase G11A
    putative serine/threonine-specific protein kinase ATPK64
    NP_001393229.1
    XP_066163011.1
    XP_066163012.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406300.1 → NP_001393229.1  protein kinase PINOID 2

      Status: VALIDATED

      Source sequence(s)
      AK101660
      UniProtKB/Swiss-Prot
      A0A0P0UZJ4, Q5VR01, Q94E49
      UniProtKB/TrEMBL
      A2WL93

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      3844888..3852395 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066306914.1 → XP_066163011.1  protein kinase PINOID 2 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0UZJ4, Q5VR01, Q94E49
      UniProtKB/TrEMBL
      A2WL93

    2. XM_066306915.1 → XP_066163012.1  protein kinase PINOID 2 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0UZJ4, Q5VR01, Q94E49
      UniProtKB/TrEMBL
      A2WL93
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94E49.1 GenPept UniProtKB/Swiss-Prot:Q94E49

    Gene LinkOut

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