U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC4325693 probable calcium-binding protein CML16 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325693, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4325693
    Gene description
    probable calcium-binding protein CML16
    Locus tag
    OSNPB_010135700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CML16; OsJ_000267
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4325693 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (1931013..1931976, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene anti-sigma-I factor RsgI6 Neighboring gene uncharacterized LOC9270186 Neighboring gene 16.6 kDa heat shock protein-like Neighboring gene 17.9 kDa heat shock protein 2-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Identification of novel OsCML16 target proteins and differential expression analysis under abiotic stresses in rice. Yang J, et al. J Plant Physiol, 2020 Jun. PMID 32408008
    2. OsCML16 interacts with a novel CC-NBS-LRR protein OsPi304 in the Ca(2+)/Mg(2+) dependent and independent manner in rice. Yang J, et al. Biochem Biophys Res Commun, 2018 Sep 26. PMID 30190132
    3. Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance. Jung H, et al. Plant Biotechnol J, 2017 Oct. PMID 28244201, Free PMC Article
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Identification of novel OsCML16 target proteins and differential expression analysis under abiotic stresses in rice.
      Title: Identification of novel OsCML16 target proteins and differential expression analysis under abiotic stresses in rice.
    2. Interaction of OsCML16 with OsPi304 indicates that they are involved in the cold stress signaling and response in rice.
      Title: OsCML16 interacts with a novel CC-NBS-LRR protein OsPi304 in the Ca(2+)/Mg(2+) dependent and independent manner in rice.
    3. OsERF48 regulates OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.
      Title: Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    probable calcium-binding protein CML16
    Names
    Calmodulin-like protein 16
    LOC_Os01g04330
    OSJNBa0083M16.46
    putative calcium binding protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409787.1 → NP_001396716.1  probable calcium-binding protein CML16

      Status: VALIDATED

      Source sequence(s)
      CI239740, CI254145, CI297157
      UniProtKB/Swiss-Prot
      A0A0N7KCA3, B7E7S4, Q0JQW4, Q5ZCK5
      UniProtKB/TrEMBL
      A2WKD1

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      1931013..1931976 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765485.2 → XP_015620971.1  probable calcium-binding protein CML16

      UniProtKB/Swiss-Prot
      Q5ZCK5
      Conserved Domains (1) summary
      PTZ00184
      Location:26 → 167
      PTZ00184; calmodulin; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZCK5.1 GenPept UniProtKB/Swiss-Prot:Q5ZCK5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials