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    LOC4334829 probable inactive poly [ADP-ribose] polymerase SRO1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334829, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC4334829
    Gene description
    probable inactive poly [ADP-ribose] polymerase SRO1
    Locus tag
    OSNPB_030854800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 69.5), leaves after flowering (RPKM 61.0) and 6 other tissues See more
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    Genomic context

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    See LOC4334829 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (36980819..36986348, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (36001938..36007524, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene heat stress transcription factor A-1-like Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 30 Neighboring gene disease resistance protein RRS1B Neighboring gene uncharacterized LOC4334832

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD+-protein poly-ADP-ribosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable inactive poly [ADP-ribose] polymerase SRO1
    Names
    Os03g0854800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      36980819..36986348 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775446.3 → XP_015630932.1  probable inactive poly [ADP-ribose] polymerase SRO1

      UniProtKB/TrEMBL
      A0A0P0W6J3, A3APW5, Q84T80
      Conserved Domains (1) summary
      pfam12174
      Location:500 → 561
      RST; RCD1-SRO-TAF4 (RST) plant domain

    2. XM_015775447.3 → XP_015630933.1  probable inactive poly [ADP-ribose] polymerase SRO1

      UniProtKB/TrEMBL
      A0A0P0W6J3, A3APW5, Q84T80
      Conserved Domains (1) summary
      pfam12174
      Location:500 → 561
      RST; RCD1-SRO-TAF4 (RST) plant domain

    3. XM_015775449.3 → XP_015630935.1  probable inactive poly [ADP-ribose] polymerase SRO1

      UniProtKB/TrEMBL
      A0A0P0W6J3, A3APW5, Q84T80
      Conserved Domains (1) summary
      pfam12174
      Location:500 → 561
      RST; RCD1-SRO-TAF4 (RST) plant domain

    4. XM_066308713.1 → XP_066164810.1  probable inactive poly [ADP-ribose] polymerase SRO1

      UniProtKB/TrEMBL
      A0A0P0W6J3, A3APW5, Q84T80

    5. XM_026024100.2 → XP_025879885.1  probable inactive poly [ADP-ribose] polymerase SRO1

      UniProtKB/TrEMBL
      A0A0P0W6J3, A3APW5, Q84T80
      Conserved Domains (1) summary
      pfam12174
      Location:500 → 561
      RST; RCD1-SRO-TAF4 (RST) plant domain

    6. XM_015775448.3 → XP_015630934.1  probable inactive poly [ADP-ribose] polymerase SRO1

      UniProtKB/TrEMBL
      A0A0P0W6J3, A3APW5, Q84T80
      Conserved Domains (1) summary
      pfam12174
      Location:500 → 561
      RST; RCD1-SRO-TAF4 (RST) plant domain
    Nucleotide Protein
    Heading Accession and Version

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