LOC4332310 ERAD-associated E3 ubiquitin-protein ligase component HRD3-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4332310
Gene description: ERAD-associated E3 ubiquitin-protein ligase component HRD3-like
Locus tag: OSNPB_030259300
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: HRD3; OsSel1
Expression: Ubiquitous expression in milk grains (RPKM 19.3), leaves after flowering (RPKM 19.0) and 6 other tissues See more
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Genomic context

Location:: chromosome: 3

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	3	NC_089037.1 (8448868..8455968)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	3	NC_029258.1 (8398767..8405826)

Chromosome 3 - NC_089037.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Endosperm-specific suppression of OsHrd3 in rice reduced the levels of polyubiquitinated proteins and resulted in unfolded protein responses in the endosperm, suggesting that OsHrd3-mediated polyubiquitination plays a role in ER quality control.
Title: OsHrd3 is necessary for maintaining the quality of endoplasmic reticulum-derived protein bodies in rice endosperm.

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: eRAD-associated E3 ubiquitin-protein ligase component HRD3

Names: ERAD-associated E3 ubiquitin-protein ligase component HRD3; LOC_Os03g15350

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001417456.1 → NP_001404385.1 eRAD-associated E3 ubiquitin-protein ligase component HRD3 precursor

Status: VALIDATED

Source sequence(s)

AK063394, AP014959

UniProtKB/Swiss-Prot

A0A0N7KGY9, Q10NT7

UniProtKB/TrEMBL

A2XEQ6