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    LOC4332752 phospholipid-transporting ATPase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332752, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4332752
    Gene description
    phospholipid-transporting ATPase 1
    Locus tag
    OSNPB_030334700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 32.0), roots before flowering (RPKM 26.2) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (12428429..12435471)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (12374490..12380337)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene uncharacterized LOC9271406 Neighboring gene uncharacterized LOC4332753 Neighboring gene E3 ubiquitin ligase PQT3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATPase-coupled intramembrane lipid transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phospholipid translocation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phospholipid-transporting ATPase 1
    Names
    Os03g0334700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      12428429..12435471
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066308627.1 → XP_066164724.1  phospholipid-transporting ATPase 1 isoform X2

    2. XM_066308626.1 → XP_066164723.1  phospholipid-transporting ATPase 1 isoform X2

    3. XM_015774226.2 → XP_015629712.2  phospholipid-transporting ATPase 1 isoform X1

      UniProtKB/TrEMBL
      Q10LU3

    4. XM_015774224.2 → XP_015629710.2  phospholipid-transporting ATPase 1 isoform X1

      UniProtKB/TrEMBL
      Q10LU3

    5. XM_026024423.2 → XP_025880208.2  phospholipid-transporting ATPase 1 isoform X1

      UniProtKB/TrEMBL
      Q10LU3
    Nucleotide Protein
    Heading Accession and Version

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