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    LOC4352127 subtilisin-chymotrypsin inhibitor-2A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352127, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4352127
    Gene description
    subtilisin-chymotrypsin inhibitor-2A
    Locus tag
    OSNPB_120437800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Sci1
    Expression
    Broad expression in roots before flowering (RPKM 4.8), roots after flowering (RPKM 4.7) and 5 other tissues See more
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    Genomic context

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    See LOC4352127 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (14839669..14840324, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC136354689 Neighboring gene probable histone H2A.7 Neighboring gene uncharacterized LOC4352129

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_089046.1 Chromosome 12 Reference ASM3414082v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in response to wounding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    subtilisin-chymotrypsin inhibitor-2A
    Names
    Os12g0437800
    subitilisin-chymotrypsin inhibitor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      14839669..14840324 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066306254.1 → XP_066162351.1  subtilisin-chymotrypsin inhibitor-2A

    Nucleotide Protein
    Heading Accession and Version

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