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    LOC4336750 1-aminocyclopropane-1-carboxylate synthase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336750, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4336750
    Gene description
    1-aminocyclopropane-1-carboxylate synthase
    Locus tag
    OSNPB_040578000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ACC2; ACS2; OsACS2
    Expression
    Biased expression in roots before flowering (RPKM 10.2), flower buds (RPKM 1.3) and 3 other tissues See more
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    Genomic context

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    See LOC4336750 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (29638003..29640803, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (29131808..29134739, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene transcription repressor OFP1 Neighboring gene protein FATTY ACID EXPORT 4, chloroplastic Neighboring gene uncharacterized LOC4336751 Neighboring gene small nucleolar RNA Z199

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in amino acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    1-aminocyclopropane-1-carboxylate synthase 2
    Names
    ACC synthase 2
    LOC_Os04g48850
    OSJNBa0011J08.4
    Os04g0578000
    NP_001406750.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419821.1 → NP_001406750.1  1-aminocyclopropane-1-carboxylate synthase 2

      Status: VALIDATED

      Source sequence(s)
      AK064250, AP014960, CI052097, CI085458, CI305379
      UniProtKB/Swiss-Prot
      Q0JAT6, Q7XQ85
      UniProtKB/TrEMBL
      A2XWP5, Q01KI9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      29638003..29640803 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XQ85.1 GenPept UniProtKB/Swiss-Prot:Q7XQ85

    Gene LinkOut

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