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    LOC4348232 NEDD8-conjugating enzyme Ubc12 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348232, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4348232
    Gene description
    NEDD8-conjugating enzyme Ubc12
    Locus tag
    OSNPB_100190000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4348232 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (6390522..6396022)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (6244539..6250080)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136353502 Neighboring gene uncharacterized LOC136353503 Neighboring gene cytosolic sulfotransferase 5 Neighboring gene small nucleolar RNA Z247

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    NEDD8-conjugating enzyme Ubc12
    Names
    Os10g0190000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      6390522..6396022
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759477.3 → XP_015614963.1  NEDD8-conjugating enzyme Ubc12

      UniProtKB/TrEMBL
      A0A0P0XT60, Q7G4N6
      Conserved Domains (1) summary
      pfam00179
      Location:33 → 169
      UQ_con; Ubiquitin-conjugating enzyme
    Nucleotide Protein
    Heading Accession and Version

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