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    LOC4331548 probable protein phosphatase 2C 28 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331548, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4331548
    Gene description
    probable protein phosphatase 2C 28
    Locus tag
    OSNPB_030137200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsPP2C28
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    Genomic context

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    See LOC4331548 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (2063483..2067007)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (2055436..2058967)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene pre-mRNA-splicing factor cwf23 Neighboring gene putative aconitate hydratase, cytoplasmic Neighboring gene protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic Neighboring gene CSC1-like protein At4g35870

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cation binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-threonine dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable protein phosphatase 2C 28
    Names
    LOC_Os03g04430
    NP_001404117.1
    XP_015631013.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417188.1 → NP_001404117.1  probable protein phosphatase 2C 28

      Status: VALIDATED

      Source sequence(s)
      CA998065, CI285511, CI341909, CI347874, CI749620, CI768206, CI775980
      UniProtKB/Swiss-Prot
      A0A0P0VT02, Q10S30, Q10S31, Q10S32

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      2063483..2067007
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775527.3 → XP_015631013.1  probable protein phosphatase 2C 28 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0VT02, Q10S30, Q10S31, Q10S32
      UniProtKB/TrEMBL
      A2XC97
      Conserved Domains (1) summary
      cd00143
      Location:49 → 356
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10S32.1 GenPept UniProtKB/Swiss-Prot:Q10S32

    Gene LinkOut

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