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    LOC4325320 fibrous sheath CABYR-binding protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325320, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4325320
    Gene description
    fibrous sheath CABYR-binding protein
    Locus tag
    OSNPB_010612700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LOL2; LOL5; OsLOL2; OsLOL5
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    Genomic context

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    See LOC4325320 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (24867821..24874861)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (24292460..24299497)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4325318 Neighboring gene uncharacterized LOC4325319 Neighboring gene uncharacterized LOC4325321 Neighboring gene GDSL esterase/lipase At1g28570

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice. Guan QJ, et al. BMC Genomics, 2016 Feb 27. PMID 26920613, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OsLOL5 ZFP could regulate oxidative stress function, but could also provide a basis for salt-resistant rice strains.
      Title: A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein LOL5
    Names
    LOC_Os01g42710
    P0046B10.32
    P0410E01.13
    Protein LOL5
    Protein LSD ONE LIKE 5
    Putative zinc finger LOL5
    zinc finger protein LSD2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409423.1 → NP_001396352.1  protein LOL5

      Status: VALIDATED

      Source sequence(s)
      AK065375, AP014957
      UniProtKB/TrEMBL
      A2WSJ7, A2ZVC5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      24867821..24874861
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q704V3.1 GenPept UniProtKB/Swiss-Prot:Q704V3

    Gene LinkOut

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