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    LOC4343265 calmodulin-binding transcription activator CBT-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343265, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4343265
    Gene description
    calmodulin-binding transcription activator CBT-like
    Locus tag
    OSNPB_070490200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 17.8), leaves after flowering (RPKM 15.5) and 6 other tissues See more
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    Genomic context

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    See LOC4343265 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (18430596..18443451, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (18205282..18218185, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357150 Neighboring gene myricetin 3-O-rhamnoside 1,2-glucosyltransferase UGT709G2 Neighboring gene uncharacterized LOC9268152 Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calmodulin-binding transcription activator CBT-like
    Names
    Os07g0490200
    P0477A12.32
    calmodulin-binding transcription activator 6
    putative calmodulin-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      18430596..18443451 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790946.3 → XP_015646432.1  calmodulin-binding transcription activator CBT-like isoform X2

      UniProtKB/Swiss-Prot
      Q2WEL1, Q7XHR2
      UniProtKB/TrEMBL
      B9FXA4
      Conserved Domains (7) summary
      smart00015
      Location:799 → 820
      IQ; Calmodulin-binding motif
      COG0666
      Location:459 → 641
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      COG5022
      Location:759 → 914
      COG5022; Myosin heavy chain [General function prediction only]
      sd00045
      Location:577 → 607
      ANK; ANK repeat [structural motif]
      pfam01833
      Location:374 → 461
      TIG; IPT/TIG domain
      pfam03859
      Location:35 → 146
      CG-1; CG-1 domain
      pfam12796
      Location:581 → 672
      Ank_2; Ankyrin repeats (3 copies)

    2. XM_015790945.3 → XP_015646431.1  calmodulin-binding transcription activator CBT-like isoform X1

      UniProtKB/TrEMBL
      B9FXA4
      Conserved Domains (7) summary
      smart00015
      Location:893 → 914
      IQ; Calmodulin-binding motif
      COG0666
      Location:553 → 735
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd00204
      Location:654 → 762
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam01833
      Location:468 → 555
      TIG; IPT/TIG domain
      pfam03859
      Location:159 → 240
      CG-1; CG-1 domain
      pfam12796
      Location:675 → 766
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:671 → 701
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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