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    LOC4324717 NADP-dependent malic enzyme [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324717, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4324717
    Gene description
    NADP-dependent malic enzyme
    Locus tag
    OSNPB_010723400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    NADP-ME2
    Expression
    Broad expression in leaves after flowering (RPKM 442.4), roots after flowering (RPKM 435.7) and 5 other tissues See more
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    Genomic context

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    See LOC4324717 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (30762978..30768618)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (30166022..30171653)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene senescence/dehydration-associated protein At4g35985, chloroplastic Neighboring gene small ribosomal subunit protein eS24z Neighboring gene B3 domain-containing protein Os01g0723500 Neighboring gene ribose-phosphate pyrophosphokinase 3, chloroplastic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables malate dehydrogenase (decarboxylating) (NADP+) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in malate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pyruvate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NADP-dependent malic enzyme
    Names
    Os01g0723400
    P0022F10.15-1
    P0022F10.15-2
    putative NADP-dependent malic protein
    NP_001411177.1
    NP_001411769.1
    XP_015620425.1
    XP_066165121.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001424248.1 → NP_001411177.1  NADP-dependent malic enzyme isoform 1

      Status: VALIDATED

      Source sequence(s)
      AB053295, CA998306, CB662267, CB667271, CF307959
      UniProtKB/TrEMBL
      B8A8R6, B9EZH0

    2. NM_001424840.1 → NP_001411769.1  NADP-dependent malic enzyme isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK099646
      UniProtKB/TrEMBL
      B7EPE0, Q5JNA0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      30762978..30768618
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309024.1 → XP_066165121.1  NADP-dependent malic enzyme isoform X2

      UniProtKB/TrEMBL
      B8A8R6, B9EZH0

    2. XM_015764939.2 → XP_015620425.1  NADP-dependent malic enzyme isoform X1

      UniProtKB/TrEMBL
      Q9FRT2
      Conserved Domains (1) summary
      PLN03129
      Location:61 → 642
      PLN03129; NADP-dependent malic enzyme; Provisional
    Nucleotide Protein
    Heading Accession and Version

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