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    LOC4348542 shewanella-like protein phosphatase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348542, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4348542
    Gene description
    shewanella-like protein phosphatase 1
    Locus tag
    OSNPB_100394100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves before flowering (RPKM 33.3), roots after flowering (RPKM 19.6) and 2 other tissues See more
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    Genomic context

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    See LOC4348542 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (13799333..13805826, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (13148985..13154109, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At5g45910 Neighboring gene GDSL esterase/lipase At1g28570-like Neighboring gene subtilisin-like protease SBT1.8 Neighboring gene putative disease resistance protein RGA3 Neighboring gene uncharacterized LOC9266805

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    shewanella-like protein phosphatase 1
    Names
    Os10g0394100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      13799333..13805826 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066304992.1 → XP_066161089.1  shewanella-like protein phosphatase 1

      UniProtKB/TrEMBL
      A2Z6W9, Q7G306, Q8L676

    2. XM_066304993.1 → XP_066161090.1  shewanella-like protein phosphatase 1

      UniProtKB/TrEMBL
      A2Z6W9, Q7G306, Q8L676

    3. XM_015757581.3 → XP_015613067.1  shewanella-like protein phosphatase 1

      UniProtKB/TrEMBL
      A2Z6W9, Q7G306, Q8L676
      Conserved Domains (1) summary
      cl13995
      Location:89 → 394
      MPP_superfamily; metallophosphatase superfamily, metallophosphatase domain

    4. XM_015757580.3 → XP_015613066.1  shewanella-like protein phosphatase 1

      UniProtKB/TrEMBL
      A2Z6W9, Q7G306, Q8L676
      Conserved Domains (1) summary
      cl13995
      Location:89 → 394
      MPP_superfamily; metallophosphatase superfamily, metallophosphatase domain

    5. XM_015757579.3 → XP_015613065.1  shewanella-like protein phosphatase 1

      UniProtKB/TrEMBL
      A2Z6W9, Q7G306, Q8L676
      Conserved Domains (1) summary
      cl13995
      Location:89 → 394
      MPP_superfamily; metallophosphatase superfamily, metallophosphatase domain
    Nucleotide Protein
    Heading Accession and Version

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