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    LOC4342166 probable proline transporter 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342166, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4342166
    Gene description
    probable proline transporter 2
    Locus tag
    OSNPB_070100800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 9.1), roots after flowering (RPKM 5.7) and 5 other tissues See more
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    Genomic context

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    See LOC4342166 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (55981..60721, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (48786..53473, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4342164 Neighboring gene protein NRT1/ PTR FAMILY 8.2-like Neighboring gene uncharacterized LOC4342167 Neighboring gene laccase-14

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables amino acid transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in amino acid transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable proline transporter 2
    Names
    B1026C12.12
    Os07g0100800
    putative proline transport protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421952.1 → NP_001408881.1  probable proline transporter 2

      Status: VALIDATED

      Source sequence(s)
      AK066298
      UniProtKB/Swiss-Prot
      Q0D986, Q69LA1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      55981..60721 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789684.3 → XP_015645170.1  probable proline transporter 2 isoform X2

      UniProtKB/TrEMBL
      A2YH99, A3BFP9
      Conserved Domains (1) summary
      cl00456
      Location:1 → 370
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    2. XM_026026897.2 → XP_025882682.1  probable proline transporter 2 isoform X3

      Conserved Domains (1) summary
      cl00456
      Location:27 → 308
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    3. XM_015789682.3 → XP_015645168.1  probable proline transporter 2 isoform X1

      UniProtKB/TrEMBL
      A2YH99
      Conserved Domains (1) summary
      cl00456
      Location:12 → 405
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    4. XM_066311952.1 → XP_066168049.1  probable proline transporter 2 isoform X2

      UniProtKB/TrEMBL
      A3BFP9

    5. XM_066311951.1 → XP_066168048.1  probable proline transporter 2 isoform X2

      UniProtKB/TrEMBL
      A3BFP9

    6. XM_015789683.3 → XP_015645169.1  probable proline transporter 2 isoform X1

      UniProtKB/TrEMBL
      A2YH99
      Conserved Domains (1) summary
      cl00456
      Location:12 → 405
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q69LA1.1 GenPept UniProtKB/Swiss-Prot:Q69LA1

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