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    LOC4324619 uncharacterized LOC4324619 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324619, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4324619
    Gene description
    uncharacterized LOC4324619
    Locus tag
    OSNPB_010771900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0695H10.9
    Expression
    Ubiquitous expression in flower buds (RPKM 9.7), leaves before flowering (RPKM 8.5) and 6 other tissues See more
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    Genomic context

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    See LOC4324619 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (33186326..33191755, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (32580711..32586167, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene fra a 1-associated protein Neighboring gene ubiquitin C-terminal hydrolase 13 Neighboring gene double-stranded RNA-binding protein 1-like Neighboring gene LOB domain-containing protein 20

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-glucosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glucan catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4324619
    Names
    Os01g0771900
    P0665A11.38
    beta-glucosidase BoGH3B
    putative exo-1,3-beta-glucanase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      33186326..33191755 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766977.3 → XP_015622463.1  uncharacterized protein LOC4324619 isoform X1

      UniProtKB/TrEMBL
      B9ET88
      Conserved Domains (1) summary
      PRK15098
      Location:31 → 620
      PRK15098; beta-glucosidase BglX

    2. XM_015766976.3 → XP_015622462.1  uncharacterized protein LOC4324619 isoform X1

      UniProtKB/TrEMBL
      B9ET88
      Conserved Domains (1) summary
      PRK15098
      Location:31 → 620
      PRK15098; beta-glucosidase BglX

    3. XM_066305300.1 → XP_066161397.1  uncharacterized protein LOC4324619 isoform X1

    4. XM_066305299.1 → XP_066161396.1  uncharacterized protein LOC4324619 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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