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    LOC4324017 BTB/POZ domain-containing protein FBL11 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324017, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324017
    Gene description
    BTB/POZ domain-containing protein FBL11
    Locus tag
    OSNPB_010968600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsIPT9; OJ1656_A11.15; OJ1656_A11.16-1; OJ1656_A11.16-2
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    Genomic context

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    See LOC4324017 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (43368123..43379212)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42715649..42726782)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324016 Neighboring gene phospholipase A1-II 6-like Neighboring gene dehydration-responsive element-binding protein 1F Neighboring gene transfer RNA leucine (anticodon UAA)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Ectopic expression of KNOTTED1-like homeobox protein induces expression of cytokinin biosynthesis genes in rice. Sakamoto T, et al. Plant Physiol, 2006 Sep. PMID 16861569, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables tRNA dimethylallyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BTB/POZ domain-containing protein FBL11
    Names
    F-box protein-like
    Os01g0968600
    Os01g0968700
    eukaryotic tRNA isopentenyltransferase
    putative tRNA isopentenyltransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      43368123..43379212
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765463.3 → XP_015620949.1  BTB/POZ domain-containing protein FBL11 isoform X1

      Conserved Domains (5) summary
      cd09293
      Location:810 → 923
      AMN1; Antagonist of mitotic exit network protein 1
      smart00875
      Location:159 → 261
      BACK; BTB And C-terminal Kelch
      PLN02748
      Location:1017 → 1464
      PLN02748; tRNA dimethylallyltransferase
      sd00034
      Location:710 → 735
      LRR_AMN1; leucine-rich repeat [structural motif]
      cl38908
      Location:65 → 141
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

    2. XM_066306838.1 → XP_066162935.1  BTB/POZ domain-containing protein FBL11 isoform X3

    3. XM_015765465.3 → XP_015620951.1  BTB/POZ domain-containing protein FBL11 isoform X2

      Conserved Domains (4) summary
      cd09293
      Location:810 → 923
      AMN1; Antagonist of mitotic exit network protein 1
      smart00875
      Location:159 → 261
      BACK; BTB And C-terminal Kelch
      sd00034
      Location:710 → 735
      LRR_AMN1; leucine-rich repeat [structural motif]
      cl21455
      Location:1037 → 1221
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RNA

    1. XR_010738859.1 RNA Sequence

    2. XR_010738856.1 RNA Sequence

    3. XR_010738858.1 RNA Sequence

    4. XR_003240312.2 RNA Sequence

    5. XR_010738854.1 RNA Sequence

    6. XR_010738855.1 RNA Sequence

    7. XR_003240311.2 RNA Sequence

    8. XR_010738857.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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