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    LOC4350814 disease resistance protein RGA5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350814, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4350814
    Gene description
    disease resistance protein RGA5-like
    Locus tag
    OSNPB_110590700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 29.3), leaves after flowering (RPKM 6.6) and 4 other tissues See more
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    Genomic context

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    See LOC4350814 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (24368613..24376256)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (22427636..22435409)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein RGA5-like Neighboring gene disease resistance protein RGA5-like Neighboring gene disease resistance protein RGA5-like Neighboring gene disease resistance protein RGA5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein RGA5-like
    Names
    Os11g0590700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      24368613..24376256
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762489.3 → XP_015617975.1  disease resistance protein RGA5-like isoform X1

      UniProtKB/TrEMBL
      Q0IRX1, Q2R1W3
      Conserved Domains (3) summary
      cd14798
      Location:4 → 133
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      sd00033
      Location:551 → 572
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:189 → 413
      NB-ARC; NB-ARC domain

    2. XM_015762493.3 → XP_015617979.1  disease resistance protein RGA5-like isoform X2

      UniProtKB/TrEMBL
      Q0IRX1, Q2R1W3
      Conserved Domains (3) summary
      cd14798
      Location:4 → 133
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      sd00033
      Location:551 → 572
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:189 → 413
      NB-ARC; NB-ARC domain

    3. XM_015762490.3 → XP_015617976.1  disease resistance protein RGA5-like isoform X1

      UniProtKB/TrEMBL
      Q0IRX1, Q2R1W3
      Conserved Domains (3) summary
      cd14798
      Location:4 → 133
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      sd00033
      Location:551 → 572
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:189 → 413
      NB-ARC; NB-ARC domain
    Nucleotide Protein
    Heading Accession and Version

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