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    LOC4331056 18S rRNA (guanine-N(7))-methyltransferase RID2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331056, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331056
    Gene description
    18S rRNA (guanine-N(7))-methyltransferase RID2
    Locus tag
    OSNPB_020804300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1548_F12.6
    Expression
    Ubiquitous expression in mature seeds (RPKM 25.9), flower buds (RPKM 20.1) and 6 other tissues See more
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    Genomic context

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    See LOC4331056 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (34793157..34795977)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (34296556..34299381)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355487 Neighboring gene uncharacterized LOC112937868 Neighboring gene small ribosomal subunit protein eS30z/eS30y/eS30x Neighboring gene uncharacterized LOC4331057 Neighboring gene uncharacterized LOC4331058

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables rRNA (guanine) methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA (guanine-N7)-methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    18S rRNA (guanine-N(7))-methyltransferase RID2
    Names
    Os02g0804300
    P0689B12.41
    probable 18S rRNA (guanine-N(7))-methyltransferase
    putative methyltransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      34793157..34795977
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771351.3 → XP_015626837.2  18S rRNA (guanine-N(7))-methyltransferase RID2

      UniProtKB/TrEMBL
      A0A0P0VQV6, B8AEE8, B9F437, Q6K852
      Conserved Domains (2) summary
      pfam12589
      Location:246 → 338
      WBS_methylT; Methyltransferase involved in Williams-Beuren syndrome
      pfam13649
      Location:100 → 198
      Methyltransf_25; Methyltransferase domain
    Nucleotide Protein
    Heading Accession and Version

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