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    LOC4334072 calmodulin-like protein 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334072, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4334072
    Gene description
    calmodulin-like protein 4
    Locus tag
    OSNPB_030743500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CML4; OsJ_12528
    Expression
    Broad expression in roots before flowering (RPKM 170.2), leaves after flowering (RPKM 158.9) and 5 other tissues See more
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    Genomic context

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    See LOC4334072 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (31400104..31402160)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (30517443..30520290)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable histone H2A variant 3 Neighboring gene uncharacterized LOC136355594 Neighboring gene DExH-box ATP-dependent RNA helicase DExH12-like Neighboring gene ATP-sulfurylase 3, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Structure and expression analysis of the OsCam1-1 calmodulin gene from Oryza sativa L. Phean-o-pas S, et al. BMB Rep, 2008 Nov 30. PMID 19017488
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Structure and expression analysis of the OsCam1-1 calmodulin gene from Oryza sativa L.
      Title: Structure and expression analysis of the OsCam1-1 calmodulin gene from Oryza sativa L.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables enzyme regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calmodulin-like protein 4
    Names
    LOC_Os03g53200
    OSJNBb0036F07.4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001418715.1 → NP_001405644.1  calmodulin-like protein 4

      Status: VALIDATED

      Source sequence(s)
      CB664250, CI409101, CI588697
      UniProtKB/Swiss-Prot
      B9FBR7, Q84MN0
      UniProtKB/TrEMBL
      B8AJU2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      31400104..31402160
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84MN0.1 GenPept UniProtKB/Swiss-Prot:Q84MN0

    Gene LinkOut

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    Research Materials