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    LOC4347782 uncharacterized LOC4347782 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347782, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4347782
    Gene description
    uncharacterized LOC4347782
    Locus tag
    OSNPB_090550000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0489D11.5; OJ1210_A07.24
    Expression
    Ubiquitous expression in roots after flowering (RPKM 22.6), leaves after flowering (RPKM 19.5) and 6 other tissues See more
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    Genomic context

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    See LOC4347782 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (26195768..26201555, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (21751740..21757576, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene U11/U12 small nuclear ribonucleoprotein 31 kDa protein Neighboring gene uncharacterized LOC4347780 Neighboring gene uncharacterized LOC9272097 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase SD1-13 Neighboring gene uncharacterized LOC9266836 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase SD1-13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4347782
    Names
    Os09g0550000
    bromodomain-containing protein 4A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      26195768..26201555 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756984.3 → XP_015612470.1  uncharacterized protein LOC4347782

      UniProtKB/TrEMBL
      B8BE61, Q0IZT9, Q69MN4
      Conserved Domains (1) summary
      cd04369
      Location:118 → 214
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
    Nucleotide Protein
    Heading Accession and Version

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